[Bioperl-l] PDB Parser

Sendu Bala bix at sendu.me.uk
Fri Aug 17 09:35:01 EDT 2007


neeti somaiya wrote:
> Hi,
> 
> I have done it currently as follows :
[snip]
> Is this ok?

If it works, of course. There seems to be some redundant code there, 
however. I'm guessing this would be better (assuming your code worked in 
the first place):

while (my $struc = $in->next_structure()) {
     my $pdb_id = $struc->id;
     print "Structure ", $pdb_id,"\n";

     my $ac = $struc->annotation();
     my ($title) = $ac->get_Annotations('title');
     $title = $title->as_text;
     chomp($title);
     if ($title =~ /Value\: (.*)/) {
         $title = $1;
     }
     $title =~ s/\s+/ /g;

     print "Title ",$title,"\n";
}


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