[Bioperl-l] Is it possible to do contig alignments?
bix at sendu.me.uk
Fri Aug 24 04:35:23 EDT 2007
Florent Angly wrote:
> Dear list members,
> I would like to "produce" an alignment of a contig, or more exactly
> visualize it in a such a fashion based on the aligned sequences provided
> to be by a sequence assembler:
> Consensus: ACGTACGTTG
> Sequence1: ACG-AC
> Sequence2: CGTACGT
> Sequence3: AC-TTG
> It sounds like a very trivial task but after searching for a long time,
> it seems impossible using the methods BioPerl provides.
Isn't Bio::Assembly::Contig what you need?
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