[Bioperl-l] Bio::Ontology::Term (rollback question)

Chris Fields cjfields at uiuc.edu
Mon Aug 27 18:31:01 EDT 2007


This is related to the ongoing Feature/Annotation rollback.  I have  
found that a few Ontology-related modules are (either directly or  
indirectly) passing strings instead of Bio::Annotation::DBLinks to  
Bio::Ontology::Term::new(), add_dblink(), or add_dblink_context()  
(thelast is where the error occurs).

If needed we could allow strings to be passed but this isn't  
consistent with the API.  Any thoughts on what to do here?

chris


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