[Bioperl-l] Feature/Annotation rollback finished

Scott Cain cain.cshl at gmail.com
Thu Aug 30 12:28:47 EDT 2007


Hi Hilmar,

I'm using it as Chris suggested: where I had be depending on ""
overloading.  I think in most places, I am using it on
Bio::Annotation::SimpleValue to get the string that is the simple value.
On more complex data types, I am using other methods built into those
classes to extract useful stuff for inserting into the database.

Scott



On Thu, 2007-08-30 at 12:07 -0400, Hilmar Lapp wrote:
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> On Aug 30, 2007, at 11:46 AM, Scott Cain wrote:
> 
> > Good news!  I only had to add a few defineds and a few  
> > display_texts and
> > I was able to successfully create a database and load the yeast GFF3
> 
> Scott - I'm a little worried - what are you using the display_text()  
> calls for? There is no method to set a property that would be  
> returned here, so you only have control over that if you override the  
> method in a custom AnnotationI class.
> 
> 	-hilmar
> - --
> ===========================================================
> : Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
> ===========================================================
> 
> 
> 
> 
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   cain.cshl at gmail.com
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory

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