[Bioperl-l] Bio::Assembly::IO problems reading .ace files

Chris Fields cjfields at uiuc.edu
Tue Dec 4 00:20:07 EST 2007

The ulimit fix usually works but if this is for Gbrowse it probably  
isn't prudent.  It would be nice to get Bio::Assembly working as an  
Bio::AlignI; it would be easier to manipulate for display.  Here's a  
script I wrote up as an example:



On Dec 3, 2007, at 8:32 PM, Smithies, Russell wrote:

> Thanx Chris,
> I'm only writing a simple .ace viewer to display assembled contigs  
> in a
> Bio::Graphics::Panel so I'll parse the coords from the .ace files
> "manually".
> Unless anyone else has a better idea ?
> (and some example code ;-)
> Russell

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