[Bioperl-l] extracting CDS location from Genbank

michael watson (IAH-C) michael.watson at bbsrc.ac.uk
Tue Dec 4 10:21:34 EST 2007

Post the script that produces that error, and your file's location 

-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org
[mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Captainrave
Sent: 04 December 2007 15:07
To: Bioperl-l at lists.open-bio.org
Subject: Re: [Bioperl-l] extracting CDS location from Genbank

Yes but actually implementing it is another story.

I get an error:

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: file argument provided, but with an undefined value
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Perl/site/lib/Bio/Root/Root.pm:359
STACK: Bio::SeqIO::new C:/Perl/site/lib/Bio/SeqIO.pm:359
STACK: test3.pl:7

Basically because I dont understand the code well enough.  For example,
do I tell it which input file to read? I know this might sound stupid,
but I
dont understand the Biowiki very well!

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