[Bioperl-l] New Bio::Tools::Run::Phylo::SLR - Wrapper around the SLR program
jason at bioperl.org
Tue Dec 4 12:16:30 EST 2007
Excellent - thanks for this ! I'm giving it whirl on linux and the
SLR.t test is currently taking more than 30 minutes to run -- is it
possible to cook up an example that is going to finish in a more
reasonable amount of time?
Also - I would prefer if the default exe could be 'Slr' rather than
Slr_Linux_static - it seems like it is possible for users to install
it this way. Similarly whether or not the Slr_osx or Slr is the
default name, is it too big of a deal to expect the user to rename it?
I'll give it a whirl on OSX later, but might be easier if the test
On Dec 4, 2007, at 3:51 AM, Albert Vilella wrote:
> Hi all,
> There is a new wrapper in bioperl-run for SLR:
> Right now, output parsing is very simple, and I have only tested it on
> my linux machine.
> Can someone with a Mac give it a try?
> update your bioperl-run to cvs head, then:
> # try the installer, SLR is option 6
> perl scripts/bioperl_application_installer.PLS
> # then try to run the tests (should take about a minute)
> perl t/SLR.t
> Any comments on the code would be appreciated,
> Thanks in advance,
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
More information about the Bioperl-l