[Bioperl-l] New Bio::Tools::Run::Phylo::SLR - Wrapper around the SLR program

Jason Stajich jason at bioperl.org
Tue Dec 4 12:16:30 EST 2007

Excellent - thanks for this !  I'm giving it whirl on linux and the  
SLR.t test is currently taking more than 30 minutes to run -- is it  
possible to cook up an example that is going to finish in a more  
reasonable amount of time?

Also - I would prefer if the default exe could be 'Slr' rather than  
Slr_Linux_static - it seems like it is possible for users to install  
it this way.  Similarly whether or not the Slr_osx or Slr is the  
default name, is it too big of a deal to expect the user to rename it?

I'll give it a whirl on OSX later, but might be easier if the test  
runs shorter.

On Dec 4, 2007, at 3:51 AM, Albert Vilella wrote:

> Hi all,
> There is a new wrapper in bioperl-run for SLR:
> http://www.bioperl.org/wiki/SLR
> Right now, output parsing is very simple, and I have only tested it on
> my linux machine.
> Can someone with a Mac give it a try?
> update your bioperl-run to cvs head, then:
> # try the installer, SLR is option 6
> perl scripts/bioperl_application_installer.PLS
> # then try to run the tests (should take about a minute)
> perl t/SLR.t
> Any comments on the code would be appreciated,
> Thanks in advance,
> Cheers,
>     Albert.
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