[Bioperl-l] How to get the contents?
karchana at ibab.ac.in
Thu Dec 13 22:56:14 EST 2007
I am new to bioperl.
I am using module Bio::SeqIO;
I have genbank file. http://www.nabble.com/file/p14329679/seq.gb seq.gb
In this file i have to match gene tag and get all its contents.
which function i have to use?
The gene portion look like this
/note="Derived by automated computational analysis
gene prediction method: BestRefseq. Supporting evidence
includes similarity to: 1 mRNA"
i have to match gene tag and get its contents?
foreach $feat ($seq->get_all_SeqFeatures())
if($feat->primary_tag eq "mRNA")
foreach $tag ($feat->get_all_tags())
if($tag eq "gene")
#here i have to retrieve the information like
How do i do that?
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