[Bioperl-l] How to get the contents?

Information_details karchana at ibab.ac.in
Thu Dec 13 22:56:14 EST 2007


I am new to bioperl.

I am using module  Bio::SeqIO;

I have genbank file. http://www.nabble.com/file/p14329679/seq.gb seq.gb 

In this file i have to match gene tag and get all its contents.

which function i have to use?

The gene portion look like this

 gene            1..485
                     /note="Derived by automated computational analysis
                     gene prediction method: BestRefseq. Supporting evidence
                     includes similarity to: 1 mRNA"

i have to match gene tag and get its contents?


foreach $feat ($seq->get_all_SeqFeatures())
        if($feat->primary_tag eq "mRNA")
                foreach $tag ($feat->get_all_tags())
                        if($tag eq "gene")
                            #here i have to retrieve the information like
How do i do that?  

with regards

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