[Bioperl-l] How to get from gi/ref/gb to genomic coordinates ?

Chris Fields cjfields at uiuc.edu
Thu Feb 1 13:09:16 EST 2007


> If the data is available in GenBank you could run the BLAST searches
> at NCBI and limit the search with an Entrez query:
>
> http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#entrez_query
>
> Most (all?) genome files are tagged as complete

sorry, didn't finish that...

"Most (all?) genome files are tagged as complete, wgs, in progress,  
etc. and can be limited by taxonomy using Fungi[ORGN] or similar."

chris


More information about the Bioperl-l mailing list