[Bioperl-l] Fwd: Regarding Bioperl program

Jason Stajich jason at bioperl.org
Thu Feb 1 19:55:26 EST 2007


re-forwarding Sandhya's email to the list so the email address is  
visible.

The approach that is coded in bioperl is for distance based data such  
as evolutionary distance of DNA or protein sequences - I assume you  
are talking about clustering expression data? You may want to focus  
on the available literature and toolkits that focus on expression  
data - something BioPerl doesn't deliberately focus on right now.

-jason
Begin forwarded message:

> From: "sandhya khatal" <sandhya.khatal at gmail.com>
> Date: February 1, 2007 5:06:42 AM PST
> To: jason at bioperl.org
> Subject: Regarding Bioperl program
>
> Respected Sir,
>                      I want to do a program which gives dendrogram  
> like
> UPGMA a clustering method, but i want this dendrogram by using single
> linkage or centroid method.Can u help me for this.U have given the  
> code for
> tree but i want dendrogram as output by using above any method.
>
> Thanks for anticipating.
>
> Regards,
> Sandhya Khatal.

--
Jason Stajich
Miller Research Fellow
University of California, Berkeley
lab: 510.642.8441
http://pmb.berkeley.edu/~taylor/people/js.html
http://fungalgenomes.org/



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