[Bioperl-l] BLASTXML changes (good this time!)
cjfields at uiuc.edu
Thu Feb 8 09:20:26 EST 2007
BLAST XML parsing should now work for any CPAN-based XML::SAX parser!
XML::SAX::PurePerl (comes with XML::SAX, the slowest)
XML::SAX::ExpatXS (the fastest)
Grant MacLean has updated XML::SAX on CPAN to fix a XML::SAX:PurePerl
bug, so using that parser will necessitate an XML::SAX upgrade. I
had also found a bug in the SAX handler which chopped off a large
chunk of the description for hits which is now fixed in CVS.
If Sendu is out there, I think we can safely remove any dependencies
beyond XML::SAX 0.15 for the next release. Should I go ahead and
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