[Bioperl-l] bioperl newbie needs help with extracting cds info

Sheri Simmons sheris at eps.berkeley.edu
Thu Feb 8 12:42:27 EST 2007


Hi,
I'm a newbie to BioPerl so apologies if this is a very basic 
question. I am trying to parse GenBank files with the goal of 
creating concatenated gene lists in nucleic acid or amino acid 
format. It is working fine, except for one thing: I need to create 
gene labels incorporating information on whether the gene is on the 
complementary strand or not ("complement" in the CDS tag). How can I 
get Bioperl to tell me whether the CDS tag value includes the word 
"complement"?

Thanks
Sheri



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