[Bioperl-l] Perl script to extract from ncbi

Brian Osborne bosborne11 at verizon.net
Fri Feb 9 12:51:19 EST 2007


George,

http://www.bioperl.org/wiki/HOWTO:Beginners#Retrieving_a_sequence_from_a_dat
abase

Brian O.


On 2/8/07 1:54 PM, "George Heller" <george.heller at yahoo.com> wrote:

> Hi all, 
>    
>   I have a question regarding extracting data from Ncbi. I have a database to
> store the sequence data, but the files I have loaded into it, dont have a
> proper description line specified. Based on the accession number, I need to
> find out what is the genus and species name (organism name) from ncbi.
>    
>   I have about 1500 records for which I need to extract the names from ncbi.
>    
>   Any ideas of how I can go about writing a perl script for extracting this
> information from ncbi?
>    
>   Thanks!
>   George.
> 
>  
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