[Bioperl-l] Error while parsing

Chris Fields cjfields at uiuc.edu
Sat Feb 10 17:56:19 EST 2007


On Feb 10, 2007, at 2:35 PM, George Heller wrote:

> Hi all,
>
>   I am in the process of parsing a few files, actually blast  
> results, but happen to get the following error:
>
>   ------------- EXCEPTION  -------------
> MSG: Can't get HSPs: data not collected.
> STACK Bio::Search::Hit::GenericHit::hsp /usr/lib/perl5/site_perl/ 
> 5.8.5/Bio/Search/Hit/GenericHit.pm:649
> STACK toplevel parser.pl:31
>   --------------------------------------
>
>   I am not sure if this is a bug, or is there something I am doing  
> wrong. Any pointers are appreciated.
>
>   Thanks!
>   George.

We'll need more to go on than that.  If the bioperl version is  
v1.5.2, please file a bug via the bioperl bugzilla:

http://bugzilla.open-bio.org/

Don't forget to attach a test file which triggers the bug using the  
'Create a new attachment' link after the report has been filed.

chris


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