[Bioperl-l] DB.t failures

Chris Fields cjfields at uiuc.edu
Wed Feb 14 09:37:07 EST 2007


Confirmed on this end.

It's possible that the default sort order from eutils is different  
now though I haven't seen anything on the eutils mail list.  There  
may be a way to set the sort order via the base URL; I'll check into  
it later today; I'm still digging myself out from the midwest blizzard.

chris

On Feb 14, 2007, at 8:02 AM, Sendu Bala wrote:

> DB.t is failing with BIOPERLDEBUG set. Apparently, we are no longer
> getting sequences back from NCBI in the order we requested them in  
> batch
> mode.
>
> Is this a change at NCBI? Is there some way we can make sure to return
> the sequences in the expected order? Or shouldn't the order be  
> expected
> (should the test script be altered)?
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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