[Bioperl-l] Bioperl Module OddCodes(help)

Torsten Seemann torsten.seemann at infotech.monash.edu.au
Mon Feb 19 18:20:48 EST 2007


> i want translate a Sequence in Fasta Format  only to acidic,basic and polar dependent on the pH.
> OddCodes Module can ony to acidic,basic, polar and hydrophobic. And i think on default pH.
> Can somebody help me? I dont know  whether it is  possible?
> Because i need for each amino acid a positive, negative charge and unchargedly.

The latest released Bioperl 1.5.x has a charge() function which does
what you want:

http://doc.bioperl.org/releases/bioperl-1.5.2/Bio/Tools/OddCodes.html

It returns A, N, C for the charges.

--Torsten


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