[Bioperl-l] Module to draw transmembrane protein topology

Chris Fields cjfields at uiuc.edu
Tue Feb 20 10:30:15 EST 2007


Sorry, I sent that last one off prematurely.

I could see this being used as a very useful utility if a Bioperl  
object had SeqFeatures which described transmembrane regions, or if  
output from something like TMHMM were parsed and used for input.   
Don't know if it's included, but if not you probably should allow  
labeling of the intracellular/extracellular space to designate  
periplasmic space, mitochondrial matrix, thylakoid, etc.

I think Bio::Graphics namespace is definitely the place to go.  If I  
ever get around to writing up the RNA structural stuff I may put  
something there myself.

chris

On Feb 20, 2007, at 8:31 AM, Tim Nugent wrote:

> Thanks Chris, glad it's appreciated.
>
> Is there anything else I can do? If anyone has any requests/ 
> suggestions
> please let me know too.
>
> Best wishes,
>
> Tim




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