[Bioperl-l] parsing a list of ids to a fasta file.

michael watson (IAH-C) michael.watson at bbsrc.ac.uk
Tue Feb 20 16:33:19 EST 2007

Suggest you use Bio::Index::Fasta to create an index for the fasta file and then a simple script to retrieve sequences using that index.  Or just use the pre-written bp_index.PLS and bp_fetch.PLS scripts.


From: bioperl-l-bounces at lists.open-bio.org on behalf of Khan, Sohail
Sent: Tue 20/02/2007 8:42 PM
To: Bioperl-l at lists.open-bio.org
Subject: [Bioperl-l] parsing a list of ids to a fasta file.

Dear list,

I am new to Bio-Perl.  I have the following question:
I have a list of ids, which I would like to parse against a large fasta file to retrieve the Seq for parsed ids.  I appreciate any suggestions.


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