[Bioperl-l] Remote blast

Sanjib Kumar Gupta sanjib at bic.boseinst.ernet.in
Mon Feb 26 00:23:36 EST 2007


Hi
I have been running this script for some time and it was running fine. I am 
using this linux machine with live IP(no proxy). But suudenly it has stopped 
working with this errors

waiting...waiting...
-------------------- WARNING ---------------------
MSG:  <HTML>
<HEAD><TITLE>An Error Occurred</TITLE></HEAD>
<BODY>
<H1>An Error Occurred</H1>
500 Can't connect to www.ncbi.nlm.nih.gov:80 (Bad 
hostname 'www.ncbi.nlm.nih.gov')
</BODY>
</HTML>

---------------------------------------------------
xx.pep

-------------------- WARNING ---------------------
MSG: req was POST http://www.ncbi.nlm.nih.gov/blast/Blast.cgi
User-Agent: bioperl-Bio_Tools_Run_RemoteBlast/1.5
Content-Length: 497
Content-Type: application/x-www-form-urlencoded

DATABASE=nr&QUERY=%3ENM_005277.3%3B_1414961_1+837%
0AMEENMEEGQTQKGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTLDVF
TMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIMLTYLFMLAWLGVTAFTSLPV
YMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKICTVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMV
HYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT*&COMPOSITION_BASED_STATISTI
CS=off&EXPECT=1e-
10&SERVICE=plain&FORMAT_OBJECT=Alignment&CMD=Put&MATRIX_NAME=BLOSUM62&ENTREZ_
QUERY=Xenopus+laevis[Organism]&PROGRAM=blastp

<HTML>
<HEAD><TITLE>An Error Occurred</TITLE></HEAD>
<BODY>
<H1>An Error Occurred</H1>
500 Can't connect to www.ncbi.nlm.nih.gov:80 (Bad 
hostname 'www.ncbi.nlm.nih.gov')
</BODY>
</HTML>

---------------------------------------------------
waiting...waiting...
-------------------- WARNING ---------------------
MSG:  <HTML>
<HEAD><TITLE>An Error Occurred</TITLE></HEAD>
<BODY>
<H1>An Error Occurred</H1>
500 Internal Server Error
</BODY>
</HTML>

---------------------------------------------------

Though I am able to see the ncbi page from browser but am unable to ping ot 
trace route to the server.

Please help me.

On Wed, 21 Feb 2007 01:00:46 -0500, bioperl-l-request wrote
> Mailing list subscription confirmation notice for mailing list
> Bioperl-l
> 
> We have received a request from 202.141.148.27 for subscription of
> your email address, "sanjib at bic.boseinst.ernet.in", to the
> bioperl-l at lists.open-bio.org mailing list.  To confirm that you want
> to be added to this mailing list, simply reply to this message,
> keeping the Subject: header intact.  Or visit this web page:
> 
>     http://lists.open-bio.org/mailman/confirm/bioperl-
l/d31449c0ad1146c7ae6d2d9b585816664f476568
> 
> Or include the following line -- and only the following line -- in a
> message to bioperl-l-request at lists.open-bio.org:
> 
>     confirm d31449c0ad1146c7ae6d2d9b585816664f476568
> 
> Note that simply sending a `reply' to this message should work from
> most mail readers, since that usually leaves the Subject: line in the
> right form (additional "Re:" text in the Subject: is okay).
> 
> If you do not wish to be subscribed to this list, please simply
> disregard this message.  If you think you are being maliciously
> subscribed to the list, or have any other questions, send them to
> bioperl-l-owner at lists.open-bio.org.

--
Sanjib Kumar Gupta
Bioinformatics Centre
Bose Institute
Kolkata 700054, INDIA
Phone  : +91-33-2355 6626, 2816, 2355 4766
Fax    : +91-33-2355 3886
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: n9.pl
Url: http://lists.open-bio.org/pipermail/bioperl-l/attachments/20070226/86a0137c/attachment.pl 


More information about the Bioperl-l mailing list