[Bioperl-l] Question to Bio::Tools::Run RemoteBlast

Jason Stajich jason at bioperl.org
Mon Feb 26 13:45:34 EST 2007


Alex -
I am glad to see of your interest in the module, but I don't  
currently have any time to maintain it and so queries should be sent  
to the BioPerl mailing list.  In general we prefer you don't contact  
developers directly, but use the mailing list so that others can  
learn from questions.

Please note there are several tutorials and documentation on the  
website, you will get a better response from people if you can show  
you have at least tried to use the existing example code to construct  
your program.

-jason
On Feb 26, 2007, at 1:55 AM, Alexander Auner wrote:

> Daer Jason Stajich,
> I hope you can me help.
>
> I am inspired of their module and would like to work with it.
> I am a student to the TFH Wildau.
> I have problems with the understanding of the module.
>
> You could send me an example.
>
> The example is to process a text file (FASTA) with NCBI-Blast (Web).
>
> Parameter:
> Choose database -> Others -> nr
> Limit by entrez query -> Campylobacter -> or select from: ->  
> Bacteria [ORGN]
> Expect -> 10
> Other advanced -> -q-1
>
> output format
> plain text without Graphical Overview
> Number of: -> Descriptions -> 10000
> Alignment view -> query-anchored with identities
>
> All other parameters remain undef.
>
> Thank you for your help.
>
> faithfully Alexander Auner
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