[Bioperl-l] Issues with new Bio::Tools::Run modules for Genemark and Glimmer
bix at sendu.me.uk
Wed Feb 28 15:52:23 EST 2007
Mark Johnson wrote:
> One final thing. I'm lazy, I don't want to deal with parsing arguments
> to the constructor, so I'm just calling _rearrange() to deal with it. The
> Bio::Tools:: parsers all take dash options, but it looks like a bunch of the
> stuff in Bio::Tools::Run:: takes dashless args. Objections?
You can make use of _set_from_args(). See Bio::Tools::Run::Phylo::Gumby
for an example.
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