[Bioperl-l] repeatmasker

Karen Buysse Karen.Buysse at UGent.be
Tue Jan 2 09:59:46 EST 2007


Dear all,

I want to use the BioPerl repeatmasker program.
However, when I run the following program (=first lines of the synopsis):

use Bio::Tools::Run::RepeatMasker;

  my @params=("mam" => 1,"noint"=>1);
  my $factory = Bio::Tools::Run::RepeatMasker->new(@params);

I get the error message: *RepeatMasker program not found as  or not 
executable.*
I have the file *RepeatMasker.pm* in the following directories:
C:/Perl/lib/Bio/Tools/Run
C:/Perl/site/lib/Bio/Tools/Run

Can anyone please help me with this?

Many thanks in advance and a happy new year,
Karen

-- 
ir. Karen Buysse
Center for Medical Genetics Ghent (CMGG)
Ghent University Hospital
Medical Research Building (MRB), 2nd floor, room 120.050
De Pintelaan 185, B-9000 Ghent, Belgium
+32 9 240 39 46 (phone) 
+32 9 240 65 49 (fax)
http://medgen.ugent.be
Karen.Buysse at UGent.be



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