[Bioperl-l] Bio::Tools RNA modules

Chris Fields cjfields at uiuc.edu
Wed Jan 3 15:35:28 EST 2007


I have added several RNA motif-based parsing modules  (Infernal,  
RNAMotif, ERPIN) over time to Bio::Tools.  However, I am in the  
process of modifying them for SearchIO-based parsing (possibly using  
Sendu's PullParserI and related modules), simply b/c I am also  
writing wrappers for said modules and want comparable results.

I'll be committing the newer SearchIO-based modules over the next  
month or two, beyond which I don't see the point of maintaining the  
various Bio::Tools-based versions.  Does anybody mind if they are  
deprecated by the next release?

chris


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