[Bioperl-l] contig disassembly

Andrew Stewart stewarta at nmrc.navy.mil
Tue Jan 16 16:11:35 EST 2007


If I want to take a Bio::Seq object representing a contig and  
disassemble it into the constituent sequences which originally lead  
to its formation, all the while preserving the feature annotation  
associated with each sub-sequence, and with the coordinates of these  
feature sets updated to reflect their position relative to these sub- 
sequences, what is the best way to go about this?  If I take a  
subsequence of a Seq object, will it carry over the relevant features  
as well?


--
Andrew Stewart
Research Assistant, Genomics Team
Navy Medical Research Center (NMRC)
Biological Defense Research Directorate (BDRD)
BDRD Annex
12300 Washington Avenue, 2nd Floor
Rockville, MD 20852

email: stewarta at nmrc.navy.mil
phone: 301-231-6700 Ext 270




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