[Bioperl-l] [Bioperl]problem with E-value

lidaof lidaof at gmail.com
Wed Jan 17 08:02:09 EST 2007


Hi Sendu,

Thanks for your reply!
the blast result and my .pl file were attached with this mail as a single
compressed file(the first attachment)
and on the machine installed bioperl 1.5.2_100
the exactly wrong message like"
Argument "1e" isn't numeric in numeric comparison (<=>) at
/usr/lib/perl5/site_perl
/5.8.5/Bio/SearchIO/blast.pm line 661, <GEN1> line 50.
Argument "1e" isn't numeric in numeric comparison (<=>) at
/usr/lib/perl5/site_perl
/5.8.5/Bio/SearchIO/blast.pm line 661, <GEN1> line 78.
"
and on the machine installed bioperl 1.5.1,no wrong message
but the output result is Different!!!
and the different result are attached as the second attachment the .pl file
is the program i wrote and i add some comments for debugging..so maybe make
you read it a little difficultly

Thanks for your attention!

Best Regards!

On 1/17/07, Sendu Bala <bix at sendu.me.uk> wrote:
>
> lidaof wrote:
> > Hi,all
> >
> > i write a script to analyze the NCBI-blast output
> > i use bioperl 1.5.2_100
> > i encountened some wrong
> > it says:
> > Argument "1e" isn't numeric in numeric comparison (<=>) at
> > /usr/lib/perl5/site_perl/5.8.5/Bio/SearchIO/blast.pm line 661,
>
> Can you send me a blast output that causes this problem please?
>
>
> Cheers,
> Sendu.
>



-- 
Li
-------------- next part --------------
A non-text attachment was scrubbed...
Name: pleaseCheck.tgz
Type: application/x-gzip
Size: 25164 bytes
Desc: not available
Url : http://lists.open-bio.org/pipermail/bioperl-l/attachments/20070117/a9a0d93d/attachment.tgz 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: the_different_result.tgz
Type: application/x-gzip
Size: 315 bytes
Desc: not available
Url : http://lists.open-bio.org/pipermail/bioperl-l/attachments/20070117/a9a0d93d/attachment-0001.tgz 


More information about the Bioperl-l mailing list