[Bioperl-l] [Bioperl]problem with E-value

Sendu Bala bix at sendu.me.uk
Wed Jan 17 11:29:47 EST 2007


Chris Fields wrote:
> Is this a supported BLAST report (i.e. listed in Bio::SearchIO::blast 
> POD)?  If so, could someone please file this as a bug along with an 
> example report?  Or has this been fixed already?

No, it hasn't been fixed already. (I made a recent commit that just got 
rid of the annoying error message.) Waiting to find out how the blast 
report was created before taking any further action. It claims to be:

BLASTX 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.



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