[Bioperl-l] [Bioperl]problem with E-value

Sendu Bala bix at sendu.me.uk
Wed Jan 17 11:54:27 EST 2007


Chris Fields wrote:
> I pretty sure I know exactly what the problem is and how to fix it (if 
> you haven't done it already).  Looks like the parser trashes the rest of 
> the BLAST results data since it's not catching the next BLAST report 
> header (and not breaking out of the while() loop).  That may be what is 
> triggering the e-value error.  I have been parsing new BLAST reports 
> recently w/o that one popping up, but it may be a difference between the 
> web BLAST report and the executable (wouldn't be the first time that has 
> happened.
> 
> Did you want me to take a look?

Sure. In case you didn't notice, the reason it isn't catching the next 
BLAST report is the lack of alignments. For the few results that do have 
alignments, that's where it 'works'.


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