[Bioperl-l] [Bioperl]problem with E-value
bix at sendu.me.uk
Wed Jan 17 11:54:27 EST 2007
Chris Fields wrote:
> I pretty sure I know exactly what the problem is and how to fix it (if
> you haven't done it already). Looks like the parser trashes the rest of
> the BLAST results data since it's not catching the next BLAST report
> header (and not breaking out of the while() loop). That may be what is
> triggering the e-value error. I have been parsing new BLAST reports
> recently w/o that one popping up, but it may be a difference between the
> web BLAST report and the executable (wouldn't be the first time that has
> Did you want me to take a look?
Sure. In case you didn't notice, the reason it isn't catching the next
BLAST report is the lack of alignments. For the few results that do have
alignments, that's where it 'works'.
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