[Bioperl-l] Parsing CDD Results?

Jason Stajich jason at bioperl.org
Fri Jan 19 14:24:51 EST 2007


if you run it locally isn't it just RPSBLAST which *used* to be  
parseable by Bio::SearchIO::blast - I am not sure now. or are you  
talking about running it via web?


On Jan 19, 2007, at 11:12 AM, Andy Lindeman wrote:

> Hi all--
>
> Has anyone figured a good way to parse the results from NCBI's CDD
> database (i.e., http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml )?
>
> Thanks much.
>
> --A
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--
Jason Stajich
Miller Research Fellow
University of California, Berkeley
lab: 510.642.8441
http://pmb.berkeley.edu/~taylor/people/js.html




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