[Bioperl-l] Parsing CDD Results?
cjfields at uiuc.edu
Fri Jan 19 14:28:43 EST 2007
AFAIK there isn't. I don't think CDD is accessible via eutils
(though I haven't tried it personally).
If there is text/XML output for the sequences in CDD then one could
possibly write up an AlignIO parser...
On Jan 19, 2007, at 1:12 PM, Andy Lindeman wrote:
> Hi all--
> Has anyone figured a good way to parse the results from NCBI's CDD
> database (i.e., http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml )?
> Thanks much.
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Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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