[Bioperl-l] Parsing CDD Results?

Chris Fields cjfields at uiuc.edu
Fri Jan 19 14:28:43 EST 2007


AFAIK there isn't.  I don't think CDD is accessible via eutils  
(though I haven't tried it personally).

If there is text/XML output for the sequences in CDD then one could  
possibly write up an AlignIO parser...

chris

On Jan 19, 2007, at 1:12 PM, Andy Lindeman wrote:

> Hi all--
>
> Has anyone figured a good way to parse the results from NCBI's CDD
> database (i.e., http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml )?
>
> Thanks much.
>
> --A
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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