[Bioperl-l] CON(structed) sequence databases?

JK (Jesper Agerbo Krogh) JK at novozymes.com
Tue Jan 30 02:45:34 EST 2007


Hi. 

What do you do about parsing sequences from the "CON"-divisions of
EMBL/Genbank? The entries looks just like this one:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=nucleotide&cmd=search&t
erm=CH445337&doptcmdl=GenBank

The bioperl 1.4 parser dies on the embl-version and the 1.5 parser uses
the complete .dat file as a single entry. 

Thanks. 

Jesper



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