[Bioperl-l] Bio::DB::Query::GenBank failures

Chris Fields cjfields at uiuc.edu
Thu Jul 5 16:21:49 EDT 2007


NCBI esearch doesn't seem to be working at the moment.  I'm getting  
'Internal Server Error' at this time.  Try back again at a later point.

chris

On Jul 5, 2007, at 2:56 PM, Glauber Wagner wrote:

> Dear All,
>
> I have a problem if Bio::DB::Query::GenBank module. I
> am trying to count the number of protein sequences and
> the module did not return the expected number by count
> object.
>
> use Bio::DB::GenBank;
> use Bio::DB::Query::GenBank;
>
> $query_string = "Trypanosoma cruzi[Organism]";
>
>   my $query =
> Bio::DB::Query::GenBank->new(-db=>'protein',
>
> -query=>$query_string);
>    my $count = $query->count;
>    my @ids   = $query->ids;
>
> print "$count\n";
>
> Thanks.
> Glauber
>
>
>
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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