[Bioperl-l] Bio::DB::Query::GenBank failures

Chris Fields cjfields at uiuc.edu
Thu Jul 5 17:42:40 EDT 2007


Update: seems to be back up.  Give it a try now.

chris

On Jul 5, 2007, at 3:21 PM, Chris Fields wrote:

> NCBI esearch doesn't seem to be working at the moment.  I'm getting
> 'Internal Server Error' at this time.  Try back again at a later  
> point.
>
> chris
>
> On Jul 5, 2007, at 2:56 PM, Glauber Wagner wrote:
>
>> Dear All,
>>
>> I have a problem if Bio::DB::Query::GenBank module. I
>> am trying to count the number of protein sequences and
>> the module did not return the expected number by count
>> object.
>>
>> use Bio::DB::GenBank;
>> use Bio::DB::Query::GenBank;
>>
>> $query_string = "Trypanosoma cruzi[Organism]";
>>
>>   my $query =
>> Bio::DB::Query::GenBank->new(-db=>'protein',
>>
>> -query=>$query_string);
>>    my $count = $query->count;
>>    my @ids   = $query->ids;
>>
>> print "$count\n";
>>
>> Thanks.
>> Glauber
>>
>>
>>
>>
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>
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
>
>
>
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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