[Bioperl-l] beginner problem with fasta headers

Chris Fields cjfields at uiuc.edu
Sat Jul 14 00:06:27 EDT 2007


Some reading material...

http://www.bioperl.org/wiki/ 
FAQ#Accession_numbers_are_not_present_for_FASTA_sequence_files
http://www.bioperl.org/wiki/ 
FAQ#I_would_like_to_make_my_own_custom_fasta_header_- 
_how_do_I_do_this.3F
http://www.bioperl.org/wiki/FASTA_sequence_format#Note

Quiz on Monday!

chris

On Jul 13, 2007, at 6:24 PM, Carlos Villacorta wrote:

> hi all,
> I have a embl sequence file, when formatting to fasta with Seqio it
> gives a long string header for each sequence that my following
> phylogenetic software cannot handle...
> Does anyone knows how to format those embl or genbank files to fasta
> but retrieving in the headers just two or three fields (e.g. id | gene
> | sp_name)?
> Any advice with this problem would be very appreciated, thanks!
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> Bioperl-l at lists.open-bio.org
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