[Bioperl-l] run megablast

Georg Otto georg.otto at tuebingen.mpg.de
Mon Jul 23 09:56:46 EDT 2007


Thanks a lot! I guess I should have read the blast documentation more
carefully....

Best,

Georg

Chris Fields <cjfields at uiuc.edu> writes:
> StandAloneBlast runs the megablast executable directly, though I  
> think you can specify a MegaBlast search using blastall with the '-n'  
> flag.
>
> We could probably add this functionality in fairly easily since  
> SearchIO can parse megablast output; no one's had the need to code it  
> yet.
>
> chris
>
> On Jul 18, 2007, at 4:32 AM, Georg Otto wrote:
>
>>
>> Hi,
>>
>> is there a module to run megablast in a script (equivalent to ncbi
>> blast in StandAloneBlast.pm)?
>>
>> Cheers,
>>
>> Georg
>>



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