[Bioperl-l] error using standaloneblast through webserver

Alicia Amadoz Alicia.Amadoz at uv.es
Tue Jul 31 06:11:54 EDT 2007


Hi, I tried what you suggested and that was it, it works perfectly.
Thank you very much. 

Regards,
Alicia

> Alicia,
> 
> > Hi, i'm trying to run a bioperl script in linux with standaloneblast
> > from a webserver but I have the following error:
> > -------------------- WARNING ---------------------
> > MSG: cannot find path to blastall
> > ---------------------------------------------------
> > $ENV{BLASTDATADIR} = '/usr/local/data/';
> > $ENV{PATH} .= ':/usr/local/blast-2.2.16';
> > $ENV{BLASTDIR} = '/usr/local/blast-2.2.16/';
> 
> I think the last one (or two) paths should be
> '/usr/local/blast-2.2.16/bin' as the bin/ subdirectory of a standard
> BLAST installation is where the 'blastall' binary actually lives.
> 
> -- 
> --Torsten Seemann
> --Victorian Bioinformatics Consortium, Monash University
> 
> 




More information about the Bioperl-l mailing list