[Bioperl-l] protparam

Chris Fields cjfields at uiuc.edu
Fri Jun 8 13:45:17 EDT 2007


Another issue is namespace.  I suggest Bio::Tools::ProtParam, though  
there may be some others out there.

We can add support for direct Bio::Seq/PrimarySeq input and other  
odds and ends once it's committed.  Good work!

chris

On Jun 8, 2007, at 10:51 AM, richard wrote:

>
> Hi,
>
> ok, great, that's no problem. I'll add the POD and bioperlize it,
>
> thanks
> Rich
>
> Chris Fields wrote:
>> Richard,
>>
>> We'll gladly add this in, though it'll need to be bioperlized
>> (inherit Bio::Root::Root).  We also generally ask for tests but it
>> should be easy to write up a quick test suite using any protein seq.
>>
>> If you can could you add some bioperl-like POD to the module (i.e.
>> SYNOPSIS, AUTHOR, DESCRIPTION, etc)?
>>
>> thanks!
>>
>> chris
>>
>> On Jun 8, 2007, at 6:00 AM, richard wrote:
>>
>>
>>> Hi,
>>>
>>> I noticed that in April someone asked whether there was a bioperl  
>>> mod
>>> for obtaining protein sequence related properties using protparam.
>>> I have a module that could potentially be submitted to bioperl for
>>> this
>>> purpose. Does anybody have any thoughts on whether it should go in?
>>>
>>> Example script and the module are at:
>>>
>>> http://81.5.159.173/webshare/
>>>
>>>
>>> Cheers
>>> Rich
>>>
>>>
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>
>> Christopher Fields
>> Postdoctoral Researcher
>> Lab of Dr. Robert Switzer
>> Dept of Biochemistry
>> University of Illinois Urbana-Champaign
>>
>>
>>
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>>
>>
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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