[Bioperl-l] Bio::SeqFeature::Gene::Exon throws exception when encountering split location (Bio::Location::Split)

Mark Johnson johnsonm at gmail.com
Tue Jun 12 15:07:57 EDT 2007


I'll wait a day, and if there is no opinion to the contrary, implement
it this way.

On 6/12/07, Mark Johnson <johnsonm at gmail.com> wrote:
>     That's a good point.  Both Bio::Tools::Glimmer and
> Bio::Tools::Genemark produce Bio::SeqFeature::Gene objects, each with
> a single Bio::SeqFeature::Gene::Exon, when parsing predictions for
> prokaryotic sequence (multiple exons for eukaryotic).  There are
> eukaryotic and prokaryotic versions of both predictor families.  Maybe
> the most elegant solution would be to simply modify both modules to
> only emit Bio::SeqFeature::Generic features when operating on
> prokaryotic mode output?  Fix the data model and the problem goes
> away.  8)


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