[Bioperl-l] gff2xml

Torsten Seemann torsten.seemann at infotech.monash.edu.au
Tue Jun 12 20:18:27 EDT 2007


> I posted this on the gbrowse list earlier. I'm looking to convert gff
> data files into xml. Does anyone know of a module written to do this
> already?

What DTD do you want the XML to conform to?
eg. ChadoXML, TinySeq XML, TIGR XML ... ?

What program are you trying to get to load the XML?

BioPerl has some Bio::SeqIO:xxxxx modules for some XML formats that
you could use. There is a script "bp_seqconvert.pl -h" which comes
with BioPerl which may be useful.

--Torsten Seemann
--Victorian Bioinformatics Consortium, Monash University
--Tel +61 3 9905 9010

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