[Bioperl-l] Example code in Bioperl Tutorial

don esteban bartels.stefan at mh-hannover.de
Tue Jun 26 05:26:03 EDT 2007


Try using the Proxyconfiguration in your script:

$ENV{"HTTP_PROXY"}="http://proxy.somewhere.org:8080";




L Xu wrote:
> 
> I do have the internet connection bu not use the proxy server.
> I tested the network connection with ping command (below). The ncbi
> website 
> does not response. Is there any special network setting needed for 
> connecting the ncbi website?
> Thank you so much.
> 
> C:\>ping www.yahoo.com
> 
> Pinging www.yahoo-ht3.akadns.net [69.147.114.210] with 32 bytes of data:
> 
> Reply from 69.147.114.210: bytes=32 time=363ms TTL=45
> Reply from 69.147.114.210: bytes=32 time=319ms TTL=45
> Reply from 69.147.114.210: bytes=32 time=312ms TTL=45
> Reply from 69.147.114.210: bytes=32 time=360ms TTL=45
> 
> Ping statistics for 69.147.114.210:
>     Packets: Sent = 4, Received = 4, Lost = 0 (0% loss),
> Approximate round trip times in milli-seconds:
>     Minimum = 312ms, Maximum = 363ms, Average = 338ms
> 
> C:\>ping www.ncbi.nlm.nih.gov
> 
> Pinging www.ncbi.nlm.nih.gov [130.14.29.110] with 32 bytes of data:
> 
> Request timed out.
> Request timed out.
> Request timed out.
> Request timed out.
> 
> Ping statistics for 130.14.29.110:
>     Packets: Sent = 4, Received = 0, Lost = 4 (100% loss),
> 
> 
> 
> = = = Original message = = =
> 
> Judging by the output it looks like you have no network access or? can't 
> connect to the server (what remoteblast needs).? Make sure you? don't need 
> proxy settings.
> 
> To preempt the next question, no, I'm not going to explain what a? proxy 
> is.? The RemoteBlast docs show how to set them, and Google is a? wonderful 
> tool...
> 
> chris
> 
> On Jun 13, 2007, at 7:16 AM, L Xu wrote:
> 
> 
>    ...
> -------------------- WARNING ---------------------
> MSG: <HTML>
> <HEAD><TITLE>An Error Occurred</TITLE></HEAD>
> <BODY>
> <H1>An Error Occurred</H1>
> 500 Can't connect to www.ncbi.nlm.nih.gov:80 (connect: Unknown error)
> </BODY>
> </HTML>
> 
> ---------------------------------------------------
> ...
> 
> ___________________________________________________________
> Sent by ePrompter, the premier email notification software.
> Free download at http://www.ePrompter.com.
> 
> _________________________________________________________________
> Get a preview of Live Earth, the hottest event this summer - only on MSN 
> http://liveearth.msn.com?source=msntaglineliveearthhm
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> 

-- 
View this message in context: http://www.nabble.com/Example-code-in-Bioperl-Tutorial-tf3914295.html#a11302459
Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.



More information about the Bioperl-l mailing list