[Bioperl-l] First cut svn repository

George Hartzell hartzell at alerce.com
Thu Jun 28 09:57:00 EDT 2007


Sendu Bala writes:
 > [...]
 > I just tried:
 > 
 > svn co svn+ssh://dev.open-bio.org/home/hartzell/bioperl
 > 
 > on Mac OS X and things seemed to go well, except for this error message 
 > at the end:
 > 
 > 
 > svn: In directory 'bioperl/bioperl-live/tags/release-0-9-2/t/data'
 > svn: Can't move source to dest
 > svn: Can't move 
 > 'bioperl/bioperl-live/tags/release-0-9-2/t/data/.svn/tmp/prop-base/HUMBETGLOA.FASTA.svn-base' 
 > to 
 > 'bioperl/bioperl-live/tags/release-0-9-2/t/data/.svn/prop-base/HUMBETGLOA.FASTA.svn-base': 
 > No such file or directory
 > 
 > I also ended up with only:
 > bioperl-corba-server    bioperl-db              bioperl-live 
 > bioperl-network         bioperl-papers          biosql-schema
 > 
 > 
 > Am I doing something totally wrong here?

So, you probably wanted something like

  svn co svn+ssh://dev.open-bio.org/home/hartzell/bioperl/bioperl-live/trunk

to pick up the head of the bioperl live tree (or
/.../bioperl-run/trunk, etc...).

I just checked out

  svn co svn+ssh://dev.open-bio.org/home/hartzell/bioperl/

and it ran to completion and gave me 

   (delicious)[6:50am]~/tmp>>ls bioperl | cat
   biodata
   bioperl-cookbook
   bioperl-corba-client
   bioperl-corba-server
   bioperl-das-client
   bioperl-db
   bioperl-ext
   bioperl-gui
   bioperl-live
   bioperl-microarray
   bioperl-network
   bioperl-papers
   bioperl-pedigree
   bioperl-pipeline
   bioperl-run
   biosql-schema
   html
   task-manager
   xml-html

Can another mac os x user out there give the Great Big Checkout a try
and see if it runs to completion.  Potential problems that come to
mind are:

  - the "mac's are case insensitive, sort of" problem
  - you filled up your disk
  - something else.

g.


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