[Bioperl-l] First cut svn repository

Sendu Bala bix at sendu.me.uk
Thu Jun 28 10:19:49 EDT 2007


George Hartzell wrote:
> Sendu Bala writes:
>  > [...]
>  > I just tried:
>  > 
>  > svn co svn+ssh://dev.open-bio.org/home/hartzell/bioperl
>  > 
>  > on Mac OS X and things seemed to go well, except for this error message 
>  > at the end:
>  > 
>  > 
>  > svn: In directory 'bioperl/bioperl-live/tags/release-0-9-2/t/data'
>  > svn: Can't move source to dest
>  > svn: Can't move 
>  > 'bioperl/bioperl-live/tags/release-0-9-2/t/data/.svn/tmp/prop-base/HUMBETGLOA.FASTA.svn-base' 
>  > to 
>  > 'bioperl/bioperl-live/tags/release-0-9-2/t/data/.svn/prop-base/HUMBETGLOA.FASTA.svn-base': 
>  > No such file or directory
>  > 
>  > I also ended up with only:
>  > bioperl-corba-server    bioperl-db              bioperl-live 
>  > bioperl-network         bioperl-papers          biosql-schema

I tried again in the same location and it told me I had to 'svn 
cleanup', which I did. But subsequently it kept complaining about files 
already being there.


> I just checked out
> 
>   svn co svn+ssh://dev.open-bio.org/home/hartzell/bioperl/
> 
> and it ran to completion
[snip]
> Can another mac os x user out there give the Great Big Checkout a try
> and see if it runs to completion.  Potential problems that come to
> mind are:
> 
>   - the "mac's are case insensitive, sort of" problem
>   - you filled up your disk
>   - something else.

Well, I didn't run out of disc space. After a rm -fr * and trying again 
it failed at exactly the same point, in the same way.

svn co 
svn+ssh://dev.open-bio.org/home/hartzell/bioperl/bioperl-live/tags/release-0-9-2/t/data

causes this repeatable problem:

[...]
A    data/phredfile.phd
svn: In directory 'data'
svn: Can't move source to dest
svn: Can't move 'data/.svn/tmp/prop-base/HUMBETGLOA.FASTA.svn-base' to 
'data/.svn/prop-base/HUMBETGLOA.FASTA.svn-base': No such file or directory

That is with Mac OS X svn command-line client, version 1.4.4

I can get bioperl-live/tags/release-0-9-2/t/data to check out fine with 
a linux svn command-line client, version 1.2.3.


Cheers,
Sendu.


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