[Bioperl-l] retrieven ids
lubapardo at gmail.com
Thu Mar 1 02:48:27 EST 2007
Thank you very much.
On 28/02/07, Dave Messina <dmessina at wustl.edu> wrote:
> Whenever I'm unsure of how to do something, I first look to see if one of
> the HOWTOs on bioperl.org covers it. In this case, the Features HOWTO has
> example code which I think will do what you want.
> Genbank records typically have the coding sequence of a protein as a
> feature, so I would do something like:
> - use the RefSeq protein IDs to query Entrez and get back the Genbank
> - read the Features HOWTO to refresh my memory on the syntax for grabbing
> That HOWTO is at:
> - whip up a little script to loop through the Genbank records one at a
> time with SeqIO and pull out the cDNA sequence features.
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