[Bioperl-l] Bio::SeqIO::FTHelper

Heikki Lehvaslaiho heikki at sanbi.ac.za
Thu Mar 1 06:02:30 EST 2007


Chris,

It was meant to collect code that was common to all three main databases using 
similar feature tables.

Now might be the time to optimise the parsing speed by removing it. Do you 
have a plan how to do it?

	-Heikki

On Tuesday 27 February 2007 22:57:40 Chris Fields wrote:
> Could anyone tell me what FTHelper is used for?  From what I gather
> it rolls up seqfeature data into a lightweight object but then
> creates a SeqFeature::Generic anyway (at least for GenBank/EMBL/
> Swiss), which seems to be a waste of memory and time.  Is there
> something I'm missing (besides my sanity of course)?
>
> chris
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     _/  _/  _/  Heikki Lehvaslaiho    heikki at_sanbi _ac _za
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