[Bioperl-l] SVG output with Bio::Graphics::Panel fails

Chris Fields cjfields at uiuc.edu
Thu Mar 1 16:25:09 EST 2007


No problemo.

chris

On Mar 1, 2007, at 3:03 PM, Stefan Kirov wrote:

> Lincoln Stein wrote:
>> You need to have GD::SVG installed and then instantiate the panel  
>> with:
>> -image_class=>'GD::SVG'
>>
> Yes, silly me I was looking at the code and did not realize that =~/ 
> svg/
> is only to check, and the actual class name is taken of the arg list.
> Sorry Chris.
> Stefan
>> Lincoln
>>
>> On 3/1/07, Stefan Kirov <stefan.kirov at bms.com> wrote:
>>
>>> Stefan Kirov wrote:
>>>
>>>> Chris Fields wrote:
>>>>
>>>>
>>>>> Does SVG output via GD still require GD::SVG (or SVG::GD, I can't
>>>>> remember which)?
>>>>>
>>>>> chris
>>>>>
>>>>> On Mar 1, 2007, at 12:28 PM, Kevin Brown wrote:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> Are you certain that GD has SVG enabled in it?  Sounds like  
>>>>>> this error
>>>>>> is from outside the bioperl panel and is instead from GD and  
>>>>>> the GD
>>>>>> perl
>>>>>> module.
>>>>>>
>>>>>>
>>>>>>
>>>>> ..
>>>>> _______________________________________________
>>>>> Bioperl-l mailing list
>>>>> Bioperl-l at lists.open-bio.org
>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>>>
>>>>>
>>>>>
>>>>>
>>>> Guys, I think you missed parts of the discussion yesterday, it  
>>>> was the
>>>> object constructor, which decides if it should use GD or GD::SVG...
>>>> Stefan
>>>> _______________________________________________
>>>> Bioperl-l mailing list
>>>> Bioperl-l at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>>
>>>>
>>>>
>>> OK, sorry..
>>> In any case yes, it requires GD::SVG since the constructor  
>>> instantiate
>>> GD::SVG object if you pass  -image_class=~'svg'
>>> Stefan
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>>
>>
>>
>>
>>
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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