heikki at sanbi.ac.za
Fri Mar 2 01:08:15 EST 2007
This sounds great. Is the speed increase noticeable?
On Thursday 01 March 2007 17:24:03 Chris Fields wrote:
> I do have a rough outline of what I think could be done:
> where you could switch out handlers to deal with incoming data
> chunks. Any suggestions there are welcome.
> I'll probably commit examples of the above in the next week or two
> (GenBank, EMBL, Swiss parsers using the same handlers) which don't
> use FTHelper. So far I have all three passing tests based on genbank/
> embl/swiss.t but they need a few more tweaks before I commit.
> On Mar 1, 2007, at 5:02 AM, Heikki Lehvaslaiho wrote:
> > Chris,
> > It was meant to collect code that was common to all three main
> > databases using
> > similar feature tables.
> > Now might be the time to optimise the parsing speed by removing it.
> > Do you
> > have a plan how to do it?
> > -Heikki
> > On Tuesday 27 February 2007 22:57:40 Chris Fields wrote:
> >> Could anyone tell me what FTHelper is used for? From what I gather
> >> it rolls up seqfeature data into a lightweight object but then
> >> creates a SeqFeature::Generic anyway (at least for GenBank/EMBL/
> >> Swiss), which seems to be a waste of memory and time. Is there
> >> something I'm missing (besides my sanity of course)?
> >> chris
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> > --
> > ______ _/ _/_____________________________________________________
> > _/ _/
> > _/ _/ _/ Heikki Lehvaslaiho heikki at_sanbi _ac _za
> > _/_/_/_/_/ Associate Professor skype: heikki_lehvaslaiho
> > _/ _/ _/ SANBI, South African National Bioinformatics Institute
> > _/ _/ _/ University of Western Cape, South Africa
> > _/ Phone: +27 21 959 2096 FAX: +27 21 959 2512
> > ___ _/_/_/_/_/________________________________________________________
> > _______________________________________________
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> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
______ _/ _/_____________________________________________________
_/ _/ _/ Heikki Lehvaslaiho heikki at_sanbi _ac _za
_/_/_/_/_/ Associate Professor skype: heikki_lehvaslaiho
_/ _/ _/ SANBI, South African National Bioinformatics Institute
_/ _/ _/ University of Western Cape, South Africa
_/ Phone: +27 21 959 2096 FAX: +27 21 959 2512
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