[Bioperl-l] frac_aligned_query returning results >1.
cjfields at uiuc.edu
Fri Mar 2 08:33:08 EST 2007
On Mar 2, 2007, at 5:25 AM, Sendu Bala wrote:
> Chris Fields wrote:
>> This is related to a reported bug:
>> The relevant code used to tile HSPs is a bit brittle and
>> sometimes leads to errors like this. The error (which is
>> actually a thrown exception) is wrapped in an eval block and
>> converted to a warn for that reason. I'm not familiar with the
>> tiling algorithm used, maybe Steve can add some input?
> Depending on what exactly you're talking about here, I may have re-
> written that algorithm. Nice to know the bug survived ;)
Yep, I saw your commits (revs. 1.16, 1.17, 1.19, and 1.20). I can
check code prior to that to see if it changes anything for better or
worse or gets rid of the bug (prob. later today or tomorrow), though
I can't see why your revisions would make it worse. If anything
they're now more accurate.
Thiago can also try; just pull up a revision prior to the ones listed
above and see if it helps:
Jason had previously indicted problems with tiling (i.e. similar
exceptions were thrown) prior to your commits so I don't think your
changes are related, but one never knows.
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