[Bioperl-l] frac_aligned_query returning results >1.
cjfields at uiuc.edu
Mon Mar 5 09:11:37 EST 2007
Good to hear. Sendu's fix unfortunately doesn't work for the bug
Torsten posted in Bugzilla (which are BLASTP reports, I believe), but
I'll try a clean update to see if it changes anything.
On Mar 5, 2007, at 7:43 AM, Thiago Venancio wrote:
> Hi Sendu,
> You absolutely right !!
> I have updated all the packages and it's fine now. I have done this
> several times, but this time, I don't know why I did things in this
> On 3/5/07, Sendu Bala <bix at sendu.me.uk> wrote:
>> Thiago Venancio wrote:
>>> Hi all,
>>> So I deduce the problem is in my end, but I have updated all the
>>> packages through CPAN, using the command:
>>> perl -MCPAN -e "install Bundle::BioPerl"
>>> I think this should update all tthe essencial packages, no ?
>> No: Bundle::BioPerl doesn't install BioPerl, only some of its
>> external dependencies (and is out of date in any case).
>> Since you need the latest version of everything, get a complete CVS
>> Or install BioPerl 1.5.2 and overwrite just the needed modules I
>> outlined from CVS:
> "The way to get started is to quit talking and begin doing."
> Walt Disney
> Thiago Motta Venancio, MSc
> PhD student in Bioinformatics
> University of Sao Paulo
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> Bioperl-l at lists.open-bio.org
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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