[Bioperl-l] Bio::Tools::Run::Signalp

Neil Saunders n.saunders at uq.edu.au
Tue Mar 13 06:27:09 EDT 2007


dear BioPerlers,

Is there any better documentation for Bio::Tools::Run::Signalp other than the 
POD?  I'm trying to test it out using little more than the POD synopsis and I 
get this error:

------------------------------------------------------------
Use of uninitialized value in concatenation (.) or string at 
/usr/local/share/perl/5.8.7/Bio/Tools/Run/Signalp.pm line 235, <GEN0> line 1.
sh: Illegal option -t

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Signalp call ( -t euk -trunc 50 /tmp/81hT1BUrRk/98TZbtK884 > 
/tmp/81hT1BUrRk/XZjUtdxewD) crashed: 512
------------------------------------------------------------

It's unclear how to pass parameters to signalp using this module or even if it 
works with my signalp version (3.0).  Any pointers greatly appreciated.


Neil
-- 
  School of Molecular and Microbial Sciences
  University of Queensland
  Brisbane 4072 Australia

http://nsaunders.wordpress.com


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