[Bioperl-l] Tandem Repeats finder parser

Stefan Kirov stefan.kirov at bms.com
Tue Mar 13 09:58:57 EDT 2007


Eric,
The last time I used it, trf had a funny way of assigning filenames. Do 
you plan to parse the filenames and extract the parameters from there, 
or you are going to stick only to the content?
If you can parse the filenames, that might be very useful.
Stefan

Chris Fields wrote:
> I don't see a problem.  The best place for it is prob. in the  
> Bio::Tools namespace (unless you have other ideas).
>
> chris
>
> On Mar 12, 2007, at 5:02 PM, Eric Just wrote:
>
>   
>> Hi there,
>>
>> I have written a simple parser for Tandem Repeats Finder output.   Is
>> there any interest in including this module in Bioperl?  If so, I will
>> conform it to Bioperl standards, write some tests, then send it to
>> whomever is interested.
>>
>> Eric
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>>     
>
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
>
>
>
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>   



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