[Bioperl-l] Bio::Tools::Run::Signalp

Neil Saunders n.saunders at uq.edu.au
Tue Mar 13 14:12:40 EDT 2007


dear BioPerlers,

Re: my last post regarding Bio::Tools::Run::Signalp, my error came from an 
incorrect $ENV{'SIGNALPDIR'}.

My new error is:
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: parsing problem in signalp

which stems from the Bio::Tools::Signalp parser.  So I'm (a) wondering whether 
this module can parse SignalP 3.0 output and (b) still curious as to how to 
specify parameters to signalp using the Run module.

thanks,
Neil
-- 
  School of Molecular and Microbial Sciences
  University of Queensland
  Brisbane 4072 Australia

http://nsaunders.wordpress.com


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